Raising the lowers will help with the smaller transfers and also make a better line of flow through the piston windows. Raise the divider up into the tunnels and thin it. Smooth out the transition into the lowers but widening and enlarging doesn’t seem to help.
On the BB, you can raise the exhaust higher and leave the transfers a smidge lower. The tight transfers want more blowdown, kind of like a 7900.
Cut the popup off the piston and set your squish properly (0.025” is plenty tight). They don’t need much band cut. Anywhere you cut the plating diamond is best. Cut into the plating, not from behind it.
Make sure the muffler is wide open. 395 make a lot of heat when you raise the RPM.