If you are using a base gasket, you shouldn't have to worry about squishband clearance. Although if you are using an AM gasket, I might check it to make sure. Never know if any given AM gasket will be the exact thickness of OEM.
However, XP-Slinger and I did a gasket delete on our little brother's closed port 55 and there was plenty of clearance. But again, not being certain that everything with AM parts measures exactly the same as OEM down to the last .001", I might check squish using the first method I posted just for peace of mind. It literally only takes a few minutes. You just need to remove the sparkplug and then the recoil so you can roll the engine over by hand. Easy-peasy.