I think what ever is done with the top end needs to take into consideration the most significant change and that is reduced case capacity.
The motor needs air and fuel, and there will be less of it in the bottom end to push up into the top end.
I dont know enough about porting dynamics to make wild stabs in the dark, so I wont, but my advice is to look at what has changed that will effect the air/fuel flow dynamics and adjust to suit.
I like the theory of less intake duration because you have less capacity, but wont the saw still me moving the same volume of air up the transfers into the combustion chamber?
This has not changed, only the volume held in the bottom end has been reduced.
So considering this, wont the saw still need enough intake duration to fill the case with the same amount of air as it would if it had a standard crank?
My thinking is that with the circle crank, there will just be less left over in the case at BDC than standard, the saw will still consume the same amount of air on each cycle.